Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs34122066 chr16:5003288 G/A 4.86E-5 474 31.27 29.63 27.77 KM Plot
PRAD rs34125582 chr8:143384681 G/A 6.59E-5 482 30.93 32.05 28.13 KM Plot
PRAD rs34148524 chr2:178787381 G/A 4.15E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs34149684 chr2:178793883 TCTC/T 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs34155714 chr5:179035281 A/C 0.00015 484 30.73 34.37 32.9 KM Plot
PRAD rs34156568 chr22:18444261 C/T 3.96E-6 494 30.8 31.87 26.37 KM Plot
PRAD rs34157616 chr7:43571128 C/T 7.08E-6 487 31.27 31.18 14.4 KM Plot
PRAD rs34166400 chr17:2146392 C/G 0 494 30.97 31.13 4.87 KM Plot
PRAD rs34185358 chr2:178797736 T/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs34210163 chr1:6699273 AGTT/A 0.000192 472 30.77 31.27 31.48 KM Plot
PRAD rs34238444 chr8:143422243 C/A 1.51E-6 487 30.8 30.78 27.45 KM Plot
PRAD rs34260714 chr7:6708409 T/G 6.36E-7 479 30.8 27.4 50.03 KM Plot
PRAD rs34268902 chr20:2069863 GC/G 3.63E-7 488 28.8 33.6 29.55 KM Plot
PRAD rs34270415 chr16:5003059 G/A 4.86E-5 474 31.27 29.63 27.77 KM Plot
PRAD rs34272636 chr22:18433603 A/C 8.35E-10 484 30.27 32.63 24 KM Plot